PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G030700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 228aa    MW: 24831.6 Da    PI: 6.496
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G030700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-3871071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+k+Cv+apyf++eq + +fa++hk+FGasn +kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+++
  Manes.12G030700.2.p   7 PCGACKFLRRKCVKGCVFAPYFCHEQgATHFAAIHKVFGASNASKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMH 96 
                          7*************************89************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+la+lke+
  Manes.12G030700.2.p  97 LQAQLASLKEQ 107
                          ******99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.8376108IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-367105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH EQGATHFAAI HKVFGASNAS KLLAHLPVSD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVMHLQAQ LASLKEQAAQ SMINTSAATA  120
NPNEKYYGKA ASLPQDLQSW LQPDNSNMVP QFNPSLGNGN TTYAENGFLD PYSMGNYGNS  180
STSTSFDSFE EASHSISSLD MQTDNRRWTY QDSDDLRSVA FGYIQHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002534416.11e-129PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J73e-73LBD29_ARATH; LOB domain-containing protein 29
TrEMBLB9T8471e-129B9T847_RICCO; LOB domain-containing protein, putative
STRINGPOPTR_0002s04200.11e-121(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-73lateral organ boundaries-domain 29